Compile and Run¶
Access¶
The ICON repository is hosted on the C2SM GitHub organisation. If you do not have access, please follow the instructions under How to get Access.
If you do not already have an SSH key set up for GitHub, but would like to do so, follow the instructions .
Configure and compile¶
Säntis¶
Under construction - last update: 2025-03-17
Information on this section is not yet complete nor final. It will be updated following the progress of the Alps system deployment at CSCS and C2SM's adaptation to this new system. Please use the C2SM support forum in case of questions regarding building ICON on Alps.
ICON at C2SM¶
Clone the ICON repository on the branch santis:
git clone -b santis --recurse-submodules git@github.com:C2SM/icon.git
Run the following after navigating into ICON root folder:
# Load ICON user-environment
uenv start icon-wcp/v1:rc4
# Setup spack
SPACK_TAG=$(cat "config/cscs/SPACK_TAG_ALPS")
git clone --depth 1 --recurse-submodules --shallow-submodules -b ${SPACK_TAG} https://github.com/C2SM/spack-c2sm.git
. spack-c2sm/setup-env.sh /user-environment
# Build ICON
# For out-of-source builds: navigate into the build folder and adapt the path to the Spack environment in the following
spack external find gmake
spack env activate -d config/cscs/spack/${SPACK_TAG}/santis_gpu_nvhpc
spack install
ICON-NWP¶
Clone the ICON-NWP repository (only possible if you have access to GitLab DKRZ):
git clone --recurse-submodules git@gitlab.dkrz.de:icon/icon-nwp.git
Navigate into the ICON-NWP repository and execute the configure wrapper (replace cpu by gpu for GPU compilation):
uenv run icon-wcp/v1:rc4 -- ./config/cscs/santis.cpu.nvhpc
Euler¶
Clone the ICON repository on the main branch:
git clone --recurse-submodules git@github.com:C2SM/icon.git
Load the necessary modules:
module load stack eth_proxy
The module stack provides the software stack, including gcc/12.2.0.
The module eth_proxy enables the connection from a compute node to an external service, e.g. GitHub or GitLab.
Run the following after navigating into ICON root folder:
# Setup spack
SPACK_TAG=$(cat "config/ethz/SPACK_TAG_EULER")
git clone --depth 1 --recurse-submodules --shallow-submodules -b ${SPACK_TAG} https://github.com/C2SM/spack-c2sm.git
. spack-c2sm/setup-env.sh
Euler Support recommends to compile code on compute nodes. There, we can take advantage of multi-core compiling:
# Build ICON
# For out-of-source builds: navigate into the build folder and
# adapt the path to the Spack environment in the following
spack env activate -d config/ethz/spack/${SPACK_TAG}/euler_cpu_gcc
srun -N 1 -n 12 --mem-per-cpu=1G spack install -j 12
Run test case¶
In the run folder, you find many prepared test cases, which you can convert into run scripts. To generate the runscript of one of the experiment files, e.g. c2sm_clm_r13b03_seaice, you can use the make_runscripts function.
./make_runscripts c2sm_clm_r13b03_seaice
To run the created runscript, navigate to the run subdirectory and submit the runscript.
cd run && uenv run icon-wcp/v1:rc4 -- sbatch ./exp.c2sm_clm_r13b03_seaice.run
cd run && sbatch ./exp.c2sm_clm_r13b03_seaice.run
cd run && sbatch ./exp.c2sm_clm_r13b03_seaice.run
You may need to adjust the account in the runscript to match your permissions. Alternatively, you can include --account=<my_account_id> in the sbatch command.
Info
The data pool on santis is currently not in a persistent location, and you may not have access privileges.
Therefore, you may not be able to run the test cases at this time.
As soon as this is fixed, we will update this page accordingly.
Input data¶
The input data for standard ICON tests are stored in a Git-lfs repository .
Input data pools¶
/capstor/store/cscs/userlab/d126/testing-input-data
/cluster/work/climate/icon_input
/scratch/mch/jenkins/icon/pool/data/ICON